Research and Teaching Interests
Bioinformatics
Courses taught
- COMP 1010
- COMP 1012
- COMP 1020
- COMP 2140
- COMP 2150
- COMP 3170
- COMP 3820
Bioinformatics
S. Ravichandran, R. Ragupathy, T. Edwards, M. Domaratzki and S. Cloutier, MicroRNA-guided regulation of heat stress responses in wheat, BMC Genomics (2019) 20:488.
A. Hogan, V. Scoffone, V. Makarov, A. Gislason, H. Tesfu, M. Stietz, A. Brassinga, M. Domaratzki, X. Li, A. Azzalin, M. Biggiogera, O. Riabova, N. Monakhova, L. Chiarelli, G. Riccardi, S. Buroni and S. Cardona, Competitive fitness of essential gene knockdowns reveals a broad-spectrum antibacterial inhibitor of the cell division protein FtsZ, Antimicrobial Agents and Chemotherapy (2018),p. e01231-18
A. Gislason, K. Turner, M. Domaratzki, S. Cardona, Comparative analysis of the Burkholderia cenocepacia K56-2 essential genome reveals cell envelope functions that are uniquely required for survival in Burkholderia species, Microbial Genomics (2017)
E. Marinier, R. Zaheer, C. Berry, K. Weedmark, M. Domaratzki, P. Mabon, N. Knox, A. Reimer, M. Graham, L. Chui, L. Patterson-Fortin, J. Zhang, F. Pagotto, J. Farber, J. Mahony, K. Seyer, S. Bekal, C. Tremblay, J. Isaac-Renton, N. Prystajecky, J. Chen, P. Slade and G. van Domselaar, Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations, Nucleic Acids Research (2017) gkx702
R. Ragupathy, S. Ravichandran, M.S.R Mahdi, D. Huang, E. Reimer, M. Domaratzki and S. Cloutier, Deep sequencing of wheat Triticum aestivum small RNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV, Scientific Reports (2016) 6:39373