Research and Teaching Interests
Bioinformatics
Publications:
- S. Ravichandran, R. Ragupathy, T. Edwards, M. Domaratzki and S. Cloutier, MicroRNA-guided regulation of heat stress responses in wheat, BMC Genomics (2019) 20:488.
- A. Hogan, V. Scoffone, V. Makarov, A. Gislason, H. Tesfu, M. Stietz, A. Brassinga, M. Domaratzki, X. Li, A. Azzalin, M. Biggiogera, O. Riabova, N. Monakhova, L. Chiarelli, G. Riccardi, S. Buroni and S. Cardona, Competitive fitness of essential gene knockdowns reveals a broad-spectrum antibacterial inhibitor of the cell division protein FtsZ, Antimicrobial Agents and Chemotherapy (2018),p. e01231-18
- A. Gislason, K. Turner, M. Domaratzki, S. Cardona, Comparative analysis of the Burkholderia cenocepacia K56-2 essential genome reveals cell envelope functions that are uniquely required for survival in Burkholderia species, Microbial Genomics (2017)
- E. Marinier, R. Zaheer, C. Berry, K. Weedmark, M. Domaratzki, P. Mabon, N. Knox, A. Reimer, M. Graham, L. Chui, L. Patterson-Fortin, J. Zhang, F. Pagotto, J. Farber, J. Mahony, K. Seyer, S. Bekal, C. Tremblay, J. Isaac-Renton, N. Prystajecky, J. Chen, P. Slade and G. van Domselaar, Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations, Nucleic Acids Research (2017) gkx702
- R. Ragupathy, S. Ravichandran, M.S.R Mahdi, D. Huang, E. Reimer, M. Domaratzki and S. Cloutier, Deep sequencing of wheat Triticum aestivum small RNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV, Scientific Reports (2016) 6:39373
Courses taught
- COMP 1010
- COMP 1012
- COMP 1020
- COMP 2140
- COMP 2150
- COMP 3170
- COMP 3820